Table 5
The number of differentially expressed (DE) contigs among RNA-seq library comparisons related to a sample of pathways associated with plant-pathogen/microbe interactions. The pathway (KAAS), library comparison, and the number of contigs involved are given

KAAS Pathway

FSg3 × FSg6

FSg3 × DPg3

FSg6 × DPg3

Vibrio cholerae infection

1

5

5

Streptomycin biosynthesis

0

3

2

Plant-pathogen interaction

0

1

1

Antigen processing and presentation

0

1

1

Biosynthesis of ansamycins

0

1

1

Biosynthesis of vancomycin group antibiotics

0

1

1

Metabolism of xenobiotics by cytochrome P450

0

1

1

Tetracycline biosynthesis

0

1

1