Prokaryote 16S rRNA | Pro341F | AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCTACGGGAGGCAGCAGCCTACGGGNBGCASCAG | 95°C for 3 min, followed by 28 cycles of denaturation at 95°C for 30 sec, annealing at 55°C for 30 sec, and extension at 72°C for 30 sec, and final extension of 5 min at 72°C | 550 | Takahashi et al. (2014) |
Pro805R | CAAGCAGAAGACGGCATACGAGATNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGACTACNVGGGTATCTAATCC |
Vibrio splendidus | 16S SpF2 | ATCATGGCTCAGATTGAACG | 95°C for 10 min, and followed by 40 cycles of 15 sec at 95°C and 90 sec at 60°C | 150 | Saulnier et al. (2017) |
16S SpR2 | CAATGGTTATCCCCCACATC |
16S probe | FAMCCCATTAACGCACCCGAAGGATTGBHQ1 |
Mitochondrial 16S rRNA | 16Sar-5’ | CGCCTGTTTATCAAAAACAT | 94°C for 2 min, followed by 35 cycles of denaturation at 94°C for 30 sec, annealing at 52°C for 40 sec, and extension at 72°C for 1 min, and final extension of 10 min at 72°C | 550–600 | Ivanova et al. (2007);Palumbi (1996) |
16Sbr-3’ | CCGGTCTGAACTCAGATCACGT |