| Osteoglossiformes | Gymnarchidae | Gymnarchus niloticus | ALO |
| Osteoglossidae | Heterotis niloticus | ALO |
| Characiformes | Alestidae | Alestes dentex | ALO, GGB3 |
| Hydrocynus froskahlii | ALO, TKZ |
| Hydrocynus bervis | ALO |
| Brycinus macrolepidotus | GGB3 |
| Distichodontidae | Distichodus niloticus | ALO, GGB3 |
| Citharinidae | Citharinus citharus | ALO, GGB3, LGD, GFR |
| Cypriniformes | Cyprinidae | Cyprinus carpio | TDH, KKA, ABS, MWK, FAT |
| Labeo niloticus | ALO |
| Varicorhinus beso | TKZ, KGA, RIB |
| Raiamas loati | TKZ |
| Labeo niloticus | TKZ, GGB3 |
| Labeo forskalii | TKZ, GGB3 |
| Labeobarbus brevicephalus | KGA, RIB |
| Labeobarbus bynni | TKZ |
| Labeobarbus nedgia | TKZ, KGA, RIB |
| Labeobarbus crassibarbis | TKZ, RIB |
| Labeobarbus intermedius | TKZ, TDH, KKA, GGB1, KGA, RIB |
| Labeobarbus megastoma | RIB |
| Labeobarbus platydorsus | RIB |
| Labeobarbus macrophtalmus | RIB |
| Labeobarbus surkis | RIB |
| Garra dembensis | TKZ |
| Garra dembecha | KKA, LGD, GFR |
| Garra spp. | GGB1 |
| Small Barbus species | TKZ, FAT, GGB1, GGB3, LGD, GFR |
| Siluriforms | Bagridae | Bagrus docmak | ALO, TKZ, GGB3 |
| Bagrus bajad | TKZ, GGB3 |
| Malapteruridae | Malapterurus electricus | ALO, TKZ |
| Schilbeidae | Parailia (physailia) pellucida | ALO |
| Claroteidae | Auchenoglanis biscutatus | ALO |
| Auchenoglanis occidentalis | ALO |
| Clariidae | Clarias gariepinus | ALO, TKZ, TDH, KKA, ABS, MWK, GGB1, GGB3, KGA, RIB |
| Heterobranchus bidorsalis | ALO |
| Heterobranchus longifilis | ALO, TKZ |
| Mochokidae | Parachanna obscura | ALO |
| Synodontis caudovittata | ALO, GGB3 |
| Synodontis nigrita | ALO |
| Synodontis khartoumensis | ALO, DNB |
| Perciformes | Cichlidae | Tilapia zillii | ALO, MWK, FAT, GGB1 |
| Oreochromis niloticus | ALO, TKZ, TDH, KKA, MWK, FAT, DNB, GGB3, RIB |
| Seratherodon gallilus | ALO |
| Latidae | Lates niloticus | ALO |
| Tetraodontiformes | Tetraodontidae | Tetraodon lineatus | ALO |
| Mormyriformes | Mormyridae | Mormyrus carshyie | ALO, TKZ |
| Mormyrus kannume | GGB3 |
| Hyperopisus bebe | GGB3 |